Index

A

add_dct_basis() (nltools.data.Design_Matrix method) add_poly() (nltools.data.Design_Matrix method) Adjacency (class in nltools.data) aggregate() (nltools.data.Brain_Data method) align() (in module nltools.stats) (nltools.data.Brain_Data method)

align_states() (in module nltools.stats) append() (nltools.data.Adjacency method) (nltools.data.Brain_Data method) (nltools.data.Design_Matrix method) apply() (nltools.data.Groupby method) apply_mask() (nltools.data.Brain_Data method) astype() (nltools.data.Brain_Data method)

B

bootstrap() (nltools.data.Adjacency method) (nltools.data.Brain_Data method)

Brain_Data (class in nltools.data)

C

calc_bpm() (in module nltools.stats) calculate() (nltools.analysis.Roc method) clean() (nltools.data.Design_Matrix method) cluster_summary() (nltools.data.Adjacency method) collapse_mask() (in module nltools.mask) combine() (nltools.data.Groupby method) concatenate() (in module nltools.utils) convolve() (nltools.data.Design_Matrix method)

copy() (nltools.data.Adjacency method) (nltools.data.Brain_Data method) correlation() (in module nltools.stats) correlation_permutation() (in module nltools.stats) create_cov_data() (nltools.simulator.Simulator method) create_data() (nltools.simulator.Simulator method) create_ncov_data() (nltools.simulator.Simulator method) create_sphere() (in module nltools.mask)

D

decompose() (nltools.data.Brain_Data method) Design_Matrix (class in nltools.data) detrend() (nltools.data.Brain_Data method) dist_from_hyperplane_plot() (in module nltools.plotting) distance() (nltools.data.Adjacency method) (nltools.data.Brain_Data method) distance_correlation() (in module nltools.stats)

distance_to_similarity() (nltools.data.Adjacency method) double_center() (in module nltools.stats) download_collection() (in module nltools.datasets) download_nifti() (in module nltools.datasets) downsample() (in module nltools.stats) (nltools.data.Design_Matrix method) dtype() (nltools.data.Brain_Data method)

E

empty() (nltools.data.Brain_Data method)

expand_mask() (in module nltools.mask) extract_roi() (nltools.data.Brain_Data method)

F

fdr() (in module nltools.stats) fetch_emotion_ratings() (in module nltools.datasets) fetch_pain() (in module nltools.datasets) filter() (nltools.data.Brain_Data method)

find_spikes() (in module nltools.stats) (nltools.data.Brain_Data method) fisher_r_to_z() (in module nltools.stats) fisher_z_to_r() (in module nltools.stats)

G

gaussian() (nltools.simulator.Simulator method) generate_permutations() (nltools.data.Adjacency method) get_anatomical() (in module nltools.utils)

get_collection_image_metadata() (in module nltools.datasets) get_resource_path() (in module nltools.utils) Groupby (class in nltools.data) groupby() (nltools.data.Brain_Data method)

H

heatmap() (nltools.data.Design_Matrix method)

holm_bonf() (in module nltools.stats)

I

icc() (nltools.data.Brain_Data method) iplot() (nltools.data.Brain_Data method) isc() (in module nltools.stats) (nltools.data.Adjacency method) isc_group() (in module nltools.stats) (nltools.data.Adjacency method)

isempty() (nltools.data.Adjacency method) (nltools.data.Brain_Data method) isfc() (in module nltools.stats) isps() (in module nltools.stats)

K

KFoldStratified (class in nltools.cross_validation), [1]

M

make_cosine_basis() (in module nltools.stats) matrix_permutation() (in module nltools.stats) mean() (nltools.data.Adjacency method) (nltools.data.Brain_Data method) median() (nltools.data.Adjacency method) (nltools.data.Brain_Data method) module nltools.cross_validation nltools.datasets nltools.file_reader nltools.mask nltools.plotting nltools.prefs nltools.simulator nltools.stats nltools.utils

multi_threshold() (in module nltools.stats) multivariate_similarity() (nltools.data.Brain_Data method)

N

n_spheres() (nltools.simulator.Simulator method) nltools.cross_validation module nltools.datasets module nltools.file_reader module nltools.mask module nltools.plotting module

nltools.prefs module nltools.simulator module nltools.stats module nltools.utils module normal_noise() (nltools.simulator.Simulator method)

O

one_sample_permutation() (in module nltools.stats)

onsets_to_dm() (in module nltools.file_reader)

P

pearson() (in module nltools.stats) plot() (nltools.analysis.Roc method) (nltools.data.Adjacency method) (nltools.data.Brain_Data method) plot_between_label_distance() (in module nltools.plotting) plot_brain() (in module nltools.plotting) plot_interactive_brain() (in module nltools.plotting) plot_label_distance() (nltools.data.Adjacency method) plot_mds() (nltools.data.Adjacency method)

plot_mean_label_distance() (in module nltools.plotting) plot_silhouette() (in module nltools.plotting) (nltools.data.Adjacency method) plot_stacked_adjacency() (in module nltools.plotting) plot_t_brain() (in module nltools.plotting) predict() (nltools.data.Brain_Data method) predict_multi() (nltools.data.Brain_Data method) probability_plot() (in module nltools.plotting) procrustes() (in module nltools.stats) procrustes_distance() (in module nltools.stats)

R

r_to_z() (nltools.data.Adjacency method) (nltools.data.Brain_Data method) randomise() (nltools.data.Brain_Data method) regions() (nltools.data.Brain_Data method) regress() (in module nltools.stats) (nltools.data.Adjacency method) (nltools.data.Brain_Data method)

replace_data() (nltools.data.Design_Matrix method) resolve_mni_path() (in module nltools.prefs) Roc (class in nltools.analysis) roc_plot() (in module nltools.plotting) roi_to_brain() (in module nltools.mask)

S

scale() (nltools.data.Brain_Data method) scatterplot() (in module nltools.plotting) set_algorithm() (in module nltools.utils) set_cv() (in module nltools.cross_validation) set_decomposition_algorithm() (in module nltools.utils) shape() (nltools.data.Adjacency method) (nltools.data.Brain_Data method) similarity() (nltools.data.Adjacency method) (nltools.data.Brain_Data method) Simulator (class in nltools.simulator) smooth() (nltools.data.Brain_Data method) social_relations_model() (nltools.data.Adjacency method)

sphere() (nltools.simulator.Simulator method) split() (nltools.cross_validation.KFoldStratified method), [1] (nltools.data.Groupby method) square_shape() (nltools.data.Adjacency method) squareform() (nltools.data.Adjacency method) standardize() (nltools.data.Brain_Data method) stats_label_distance() (nltools.data.Adjacency method) std() (nltools.data.Adjacency method) (nltools.data.Brain_Data method) sum() (nltools.data.Adjacency method) (nltools.data.Brain_Data method) summarize_bootstrap() (in module nltools.stats) summary() (nltools.analysis.Roc method)

T

temporal_resample() (nltools.data.Brain_Data method) threshold() (in module nltools.stats) (nltools.data.Adjacency method) (nltools.data.Brain_Data method) to_graph() (nltools.data.Adjacency method) to_nifti() (nltools.data.Brain_Data method) (nltools.simulator.Simulator method)

transform_pairwise() (in module nltools.stats) (nltools.data.Brain_Data method) trim() (in module nltools.stats) ttest() (nltools.data.Adjacency method) (nltools.data.Brain_Data method) two_sample_permutation() (in module nltools.stats)

U

u_center() (in module nltools.stats) upload_neurovault() (nltools.data.Brain_Data method)

upsample() (in module nltools.stats) (nltools.data.Design_Matrix method)

V

vif() (nltools.data.Design_Matrix method)

W

winsorize() (in module nltools.stats)

write() (nltools.data.Adjacency method) (nltools.data.Brain_Data method)

Z

z_to_r() (nltools.data.Adjacency method) (nltools.data.Brain_Data method)

zscore() (in module nltools.stats) (nltools.data.Design_Matrix method)